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Introductions. Name Email address Favorite type of food Least favorite food Magazine you read most often All-time favorite movie Concert/performance you’d most want to see Favorite sport to play / favorite sport to watch People would be surprised to learn this about me.

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Introductions l.jpg
Introductions

  • Name

  • Email address

  • Favorite type of food

  • Least favorite food

  • Magazine you read most often

  • All-time favorite movie

  • Concert/performance you’d most want to see

  • Favorite sport to play / favorite sport to watch

  • People would be surprised to learn this about me.


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Regulation of Metabolism

NUTR 543

Advanced Nutritional Biochemistry

Dr. David L. Gee


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Characteristics of Regulatory Enzymes

  • Catalyze a rate-limiting step

  • Catalyze a committed step

    • Early step unique to a pathway

    • Irreversible step

      • Requires energy

      • Often results in a phosphorylated compound


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Types of Regulatory Mechanisms

  • Non-covalent interactions

  • Covalent modifications

  • Changes in abundance of the enzyme


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Types of Regulatory Mechanisms

  • Non-covalent interactions

  • Covalent modifications

  • Changes in abundance of the enzyme


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Non-covalent InteractionsSubstrate availability

  • Non-regulatory enzymes generally exhibit hyperbolic kinetics (Michaelis-Menton)

    • At low substrate concentration, reaction rate proportional to substrate concentration

  • Regulatory enzymes generally exhibit sigmoidal kinetics (positive cooperativity)

    • Changes of substrate concentrations at normal physiological levels greatly alter reaction rate


  • Non covalent interactions allosteric regulation l.jpg
    Non-covalent InteractionsAllosteric Regulation

    • Binding of allosteric effectors at allosteric sites affect catalytic efficiency of the enzyme


    Non covalent interactions allosteric regulation8 l.jpg
    Non-covalent InteractionsAllosteric Regulation

    • Allosteric Activators

      • Decrease Km (increases the enzyme binding affinity)

      • Increases Vmax (increases the enzyme catalytic efficiency)


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    Non-covalent InteractionsAllosteric Regulation

    • Allosteric Inhibitors

      • Increases Km (decreases enzyme binding affinity)

      • Decreases Vmax (decreases enzyme catalytic efficiency)


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    Molecues that act as allosteric effectors

    • End products of pathways

      • Feedback inhibition

    • Substrates of pathways

      • Feed-forward activators

    • Indicators of Energy Status

      • ATP/ADP/AMP

      • NAD/NADH

      • Citrate & acetyl CoA


    Non covalent interactions protein protein interactions l.jpg
    Non-covalent InteractionsProtein-Protein Interactions

    • Calmodulin (CALcium MODULted proteIN)

      • Binding of Ca++ to calmodulin changes its shape and allows binding and activation of certain enzymes


    Binding of calcium to calmodulin changes the shape of the protein l.jpg
    Binding of calcium to Calmodulin changes the shape of the protein

    Unbound Calmodulin on left

    Calcium bound Calmodulin on right. Stars indicate exposed non-polar ‘grooves’ that non-covalently binds proteins


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    Calmodulin protein

    • Extracellular [Ca] = 5 mM

    • Intracellular [Ca] = 10-4 mM

      • Most of Ca bound inside cells

      • Bound Ca can be released by hormonal action, nerve innervation, light, ….

      • Released Ca binds to Calmodulin which activates a large number of proteins


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    Calmodulin plays a role in: protein

    • Muscle contraction

    • Inflammation

    • Apoptosis

    • Memory

    • Immune response….

    • Metabolism

      • Activates phosphorylase kinase

        • Stimulates glycogen degradation during exercise


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    Types of Regulatory Mechanisms protein

    • Non-covalent interactions

    • Covalent modifications

    • Changes in abundance of the enzyme


    Covalent regulation of enzyme activity phosphorylation and dephosphorylation l.jpg
    Covalent Regulation of Enzyme Activity proteinPhosphorylation and Dephosphorylation

    • Addition or deletion of phosphate groups to particular serine, threonine, or tyrosine residues alter the enzymes activity


    Covalent regulation of enzyme activity limited proteolysis l.jpg
    Covalent Regulation of Enzyme Activity proteinLimited Proteolysis

    • Specific proteolysis can activate certain enzymes and proteins (zymogens)

      • Digestive enzymes

      • Blood clotting proteins

      • Peptide hormones (insulin)


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    Covalent Regulation of Enzyme Activity proteinEnzyme Cascades

    • Enzymes activating enzymes allows for amplification of a small regulatory signal


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    Types of Regulatory Mechanisms protein

    • Non-covalent interactions

    • Covalent modifications

    • Changes in abundance of the enzyme


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    Changes in Enzyme Abundance protein

    • Inducible vs Constitutive Enzymes

    • Induction is caused by increases in rate of gene transcription.

      • Hormones activate transcriptional factors

        • Increase synthesis of specific mRNA

        • Increase synthesis of specific enzymes


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    Hormones, Receptors, and Communication Between Cells protein

    • Hormones

      • chemical signals that coordinate metabolism

    • Hormone Receptors

      • Target tissues

      • Specific binding

      • Types

        • Intracellular receptors

        • Cell-surface receptors


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    Hormones, Receptors, and Communication Between Cells protein

    • Intracellular receptors

    • lipid soluble hormones

      • Steroid hormones, vitamin D, retinoids, thyroxine

  • Bind to intracellular protein receptors

    • This binds to regulatory elements by a gene

    • Alters the rate of gene transcription

      • Induces or represses gene transcription



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    Hormones, Receptors, and Communication Between Cells protein

    • Cell-surface receptors

      • Water soluble hormones

        • Peptide hormones (insulin), catecholamines, neurotransmitters

    • Three class of cell-surface receptors

      • Ligand-Gated Receptors

      • Catalytic Receptors

      • G Protein-linked Receptors


    Cell surface receptors ligand gated receptors l.jpg
    Cell Surface Receptors proteinLigand-Gated Receptors

    • Binding of a ligand (often a neurotransmitter) affects flow of ions in/out of cell

    • Gamma-amino butyric acid (GABA) binds and opens chloride channels in the brain

      • Valium (anti-anxiety drug) reduces the amount of GABA required to open the chloride channels


    Cell surface receptors catalytic receptors l.jpg
    Cell-Surface Receptors proteinCatalytic Receptors

    • Binding of hormone activates tyrosine kinase on receptor which phosphorylates certain cellular proteins

    • Insulin receptor is a catalytic receptor with TYR Kinase activity


    Cell surface receptors g protein linked receptors l.jpg
    Cell-Surface Receptors proteinG Protein-Linked Receptors

    • Binding of hormone activates an enzyme via a G-protein communication link.

    • The enzymes produces intracellular messengers

      • Signal transduction

      • Second messengers activate protein kinases


    Intracellular messengers signal transduction pathways l.jpg
    Intracellular Messengers: proteinSignal Transduction Pathways

    • Cyclic AMP (cAMP)

    • Diacylglycerol (DAG) & Inositol Triphosphate (IP3)

    • Cyclic GMP (cGMP)


    G protein linked receptors the camp signal transduction pathway l.jpg
    G-Protein-Linked Receptors: proteinThe cAMP Signal Transduction Pathway

    • Two types of G-Proteins

    • Stimulating G protein (Gs)

      • Activate adenylate cyclase

    • Inhibitory G proteins (Gi)

      • Inhibit adenylate cyclase


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    G Proteins protein

    • G proteins are trimers

      • Three protein units

        • Alpha

        • Beta

        • gamma


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    • Alpha proteins are different in G proteins and Gi

      • Both have GTPase activity

      • Alpha proteins modify adenylate cyclase activity

        • AC stimulated by Alpha(s) when activated by a hormone

        • AC Inhibited by Alpha(I) when activated by other hormones


    Family of g proteins l.jpg
    Family of G Proteins protein

    • Binding of hormones to receptors causes:

      • GTP to displace GDP

      • Dissociation of alpha protein from beta and gamma subunits

      • activation of the alpha protein

      • Inhibition or activation of adenylate cyclase

      • GTPase gradually degrades GTP and inactivates the alpha protein effect (clock)


    The camp signal transduction pathway l.jpg
    The cAMP Signal Transduction Pathway protein

    • cAMP – intracellular messenger

      • Elevated cAMP can either activate or inhibit regulatory enzymes

        • cAMP activates glycogen degradation

        • cAMP inhibits glycogen synthesis

    • [cAMP] affected by rates of synthesis and degradation

      • Synthesis by adenylate cyclase

      • Degradation by phosphodiesterase

        • Stimulated by insulin

        • Inhibited by caffeine


    What does camp do activation of protein kinase a by camp l.jpg
    What does cAMP do? proteinActivation of Protein Kinase A by cAMP

    • Protein kinase A

      • Activates or inhibits several enzymes of CHO and Lipid metabolism

      • Inactive form: regulatory+catalytic subunits associated

      • Active form: binding of cAMP disassociates subunits


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    Clinical Case protein

    • 25 y.o. female vacationing in Costa Rica

    • Severe diarrhea, nearly comatose

      • Diarrhea resulting in fluid loss of ~800 ml/hr

      • Hypotensive (75/50)

      • Metabolic acidosis , low bicarbonate

      • Stool sample contained Vibrio cholerae

    • IV administration of fluids, tetracycline

      • Patient improves rapidly


    Cholera background information l.jpg
    Cholera background information protein

    • Severe and rapid diarrheal disease

      • Caused by Vibrio cholerae

      • Commonly shock after 4-12 hrs after first symptoms, death 18 hrs – several days without rehydration therapy (subject can lose up to 20 liters of fluids)

      • Source is commonly contaminated water


    Cholera mechanism of action l.jpg
    Cholera proteinmechanism of action

    • V. cholarae produces protein that attaches to intestinal epithelial cells

      • Delivery subunit B (blue) facilitates entry of subunit A into cell

    • Subunit A catalyzes ADP-ribosylation of the alpha-s subunit of Gs-protein


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    Clinical Case protein

    • V. cholerae toxin affects alpha-S subunit

      • Inactivates GTP’ase

      • Alpha-S subunit permanently active

    • Stimulates adenylate cyclase

      • Overproduces cAMP

      • stimulates protein kinase

      • Phosphorylation of membrane ion transport proteins – massive losses of Na, Cl, K, HCO3


    Hypothetical link to cystic fibrosis l.jpg
    Hypothetical link to cystic fibrosis protein

    • Cystic fibrosis characterized by

      • Salty sweat

      • Very thick mucous

    • Homozygous genetic defect to chloride transport to mucous

      • Decreased chloride results in less water following due to osmosis, leading to thicker mucous

    • Heterozygous mutation (normal mucous) has transport protein resistant to effects of cholera toxin ?


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    Intracellular Messengers: proteinSignal Transduction Pathways

    • Cyclic AMP (cAMP)

    • Diacylglycerol (DAG) & Inositol Triphosphate (IP3)

    • Cyclic GMP (cGMP)


    Dag ip 3 phosphotidylinositol signal transduction pathway l.jpg
    DAG & IP protein3Phosphotidylinositol Signal Transduction Pathway

    • Hormone activation of phospholipase C

      • Via Gp protein

    • Phospholipase C hydrolyzes membrane phospholipids (phosphotidyl inositol) to produce DAG and IP3


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    DAG & IP protein3Phosphotidylinositol Signal Transduction Pathway

    • IP3 stimulates release of Ca from ER

    • Protein kinase C activated by DAG and calcium


    Intracellular messengers signal transduction pathways43 l.jpg
    Intracellular Messengers: proteinSignal Transduction Pathways

    • Cyclic AMP (cAMP)

    • Diacylglycerol (DAG) & Inositol Triphosphate (IP3)

    • Cyclic GMP (cGMP)


    Cgmp the cgmp signal transduction pathway l.jpg
    cGMP proteinThe cGMP Signal Transduction Pathway

    • cGMP effects:

    • lowering of blood pressure & decreasing CHD risk

      • Relaxation of cardiac muscle

      • Vasodilation of vascular smooth muscle

      • Increased excretion of sodium and water by kidney

      • Decreased aggregation by platelet cells


    Cgmp the cgmp signal transduction pathway45 l.jpg
    cGMP proteinThe cGMP Signal Transduction Pathway

    • Two forms of guanylate cyclase

    • Membrane-bound

      • Activated by ANF (atrial natriuretic factor)

        • ANF released when BP elevated

  • Cytosolic

    • Activated by nitric oxide

    • NO produced from arginine by NO synthase (activated by Ca)

      • Nitroglycerine slowly produces NO, relaxes cardiac and vascular smooth muscle, reduces angina

  • cGMP activates Protein Kinase G

    • Phosphorylates smooth muscle proteins


  • Cgmp the cgmp signal transduction pathway46 l.jpg
    cGMP proteinThe cGMP Signal Transduction Pathway


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