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DNA Microarray Experiment. See Microarray Animation. Cyber Tools for Undergraduate Education. G C A T : Network of faculty collaborating to bring cyber tools into undergraduate classrooms Students from across the U.S. sharing data Shared resources to make microarray experiments affordable

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DNA Microarray Experiment

See Microarray Animation

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Cyber Tools for Undergraduate Education

  • GCAT: Network of faculty collaborating to bring cyber tools into undergraduate classrooms
  • Students from across the U.S. sharing data
  • Shared resources to make microarray experiments affordable
  • Clearing house of information for students and teachers
  • Database of results for teaching and research

www.bio.davidson.edu/GCAT

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How Does GCAT Work?

  • Collects requests for DNA chips; currently 7 species available
  • Obtains microarrays from academic suppliers
  • Distributes chips to faculty teaching undergraduates
  • Undergraduates conduct experiments
  • Chips are sent to GCAT to scan (NSF-funded scanners)
  • FTP data to students for analysis (< 24 hours)
  • Students and faculty share data
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GCAT Resources

  • Protocols and FAQs
  • Data sets
  • Free Software
  • Listserv
  • Workshops
  • 7 Species and growing
  • Experienced faculty for technical support
  • Community of faculty for moral support

See Microarray Animation

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Free Software and Math Tools

Online Clustering Activitygcat.davidson.edu/bioinformatics/clustering/jas/clustering.htm

Diauxic Shift Data Analysisgcat.davidson.edu/GCAT/workshop2/derisi_lab.html

Correlation Calculations Activitygcat.davidson.edu/Online_Genomics/Online.html#r

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Participating GCAT Schools

http://www.bio.davidson.edu/projects/GCAT/gcat.html#workshops

  • 3 Countries (US, Canada and Australia)
  • 100 Faculty at 90 US Institutions
  • 2800 Undergraduates
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