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Total genes: 41,029 (Putative disease resistance genes: 244)

Total genes: 41,029 (Putative disease resistance genes: 244). Comparable of expression level by Tophat / cuffdiff. ‘‘Yes’’. ‘‘No’’. 12,664 (29). 28,365 (215). Two-fold differential expression level with 95% confidence. ‘‘Yes’’. ‘‘No’’. 16,754 (171). No-read in both lines.

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Total genes: 41,029 (Putative disease resistance genes: 244)

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  1. Total genes: 41,029 (Putative disease resistance genes: 244) Comparable of expression level by Tophat/cuffdiff ‘‘Yes’’ ‘‘No’’ 12,664 (29) 28,365 (215) Two-fold differential expression level with 95% confidence ‘‘Yes’’ ‘‘No’’ 16,754 (171) No-read in both lines 418 (9) genes 12,246 (20) 11,611 (44) RL>SL 183 (6) RL<SL 235 (3) 13,782 (152) No-read in one of the two parents ‘‘Yes’’ ‘‘No’’ 2,972 (19) Two-fold differential expression level without 95% confidence 3,210 (42) genes 10,572 (110) Bra012688 Bra012689 RL>SL 1,367 (7) RL<SL 1,605 (12) RL>SL 1,522 (28) RL<SL 1,688 (14) Figure S1

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