Ontology based analyses methods ++. develop a grammar for making productions using mf, bp, cl: derive a higher level grammar for next level of productions derive a formal annotation language? Add structure awareness : Create an iconic mapping for cl terms to facilitate novel analyses.
TF-sites show that the ABRE and GBF sites are enriched in these genes.
Component and function annotations show that these genes are located in the chloroplast thylakoid membrane, are part of the light-harvesting complex and have the molecular function of chlorophyll binding and electron transport.
<Some MF> in <Some BP>
The photosynthesis genes located in the chloroplast are repressed in response to ozone stress and have the ABRE binding site enriched in their promoters.
The genes of the photosynthesis proteins located in the chloroplast show a decrease in their mRNA level in response to ozone stress and have the ABRE binding site enriched in their promoters.
Established links between the cellular structure terms in FMA and the GO cellular component terms
Did it for 150 terms
Established links between tissue-region annotations and brain anatomy terms in FMAAnatomy centric views by Gennari et al
Cyclin D1 is associated with cellular proliferation in colon
Cyclin D1 is associated with neuronal degeneration in brain
Cyclin D1 has <mf> in cellular proliferation in colon
Overlay time course data onto the GO tree.
See how the ‘enriched’ categories change over time.
Understand the dynamics of the biological phenomenon being studied.