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High Performance Computing on an IBM Cell Processor Bioinformatics

Team Members Kyle Byerly Shannon McCormick Matt Rohlf Bryan Venteicher Advisor Dr. Zhao Zhang. High Performance Computing on an IBM Cell Processor Bioinformatics. Functional Requirements. Ported applications shall run on the Cell/B.E.

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High Performance Computing on an IBM Cell Processor Bioinformatics

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  1. Team Members Kyle Byerly Shannon McCormick Matt Rohlf Bryan Venteicher Advisor Dr. Zhao Zhang High Performance Computing on an IBM Cell ProcessorBioinformatics

  2. Functional Requirements • Ported applications shall run on the Cell/B.E. • Ported applications shall return the same results as the original applications • Ported applications shall return their running time for comparisons

  3. Block Diagram

  4. Functional decomposition • Cannot be done at this time as we have not chosen the software we are porting.

  5. Specifications • It should be able to be compiled on the Cell/B.E. and take advantage of the SPEs when applicable • When the user runs the program it shall seem no different other than perhaps faster than running it on any other computer. • Ported applications shall return their running time for comparisons in the same format as the BioPerf Suite

  6. Proposed Design Method • Run a profiler on the code • Find hotspots • Find parallelizable hotspots • Parallelize for SPEs • Testing • Benchmark

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