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Profiles Research Networking Software Users Group Meeting http://profiles.catalyst.harvard.edu. July 19, 2013. Agenda. Welcome to New Members Upcoming Events Updates Identifying Translational Science. Profiles Users Group Members. UCSF Fred Hutchinson CRC Oregon Health Sci U

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Profiles research networking software users group meeting http profiles catalyst harvard edu

Profiles Research Networking SoftwareUsers Group Meetinghttp://profiles.catalyst.harvard.edu

July 19, 2013


Agenda

Agenda

  • Welcome to New Members

  • Upcoming Events

  • Updates

  • Identifying Translational Science


Profiles users group members

Profiles Users Group Members

UCSF

Fred Hutchinson CRC

Oregon Health Sci U

Lawrence Berkeley

UC Davis (CBST)

Touro University

U Southern California

UCLA

UC San Diego

Charles Drew

U Hawaii

Arizona State

Montana State

U Colorado Denver

U Nebraska-Lincoln

UW Madison

UW-Milwaukee

U Illinois

U Chicago

Baylor College Med

UT Southwestern

UT Houston

Midwestern State Univ

Jackson State (RTRN)

Ohio State

Cincinnati Children’s

Case Western

U Kentucky

Vanderbilt Stem Cell

U Arkansas Little Rock

U Alabama Birmingham

Tulane University

Harvard

Univ Minnesota

Dartmouth

Univ Mass

Boston Univ

Tufts Univ

Boston VA

Rensselaer

Univ Connecticut

Univ Rochester

NYU Med Ctr

Long Island University

Stony Brook University

Mount Sinai Sch of Med

New Jersey Med Sch

MedMeme

Thomas Jefferson

UPenn

Johns Hopkins

USUHS-CNRM

NIH

George Wash U

Penn State

Childrens Nat Med Ctr

Duke Cancer Institute

Wake Forest

Leadership in Med

HSSC

Georgia Tech

Piedmont Healthcare

Emory University

Symplectic Limited (UK)

University of Dundee (UK)

McGill University (Canada)

Finders University (Australia)

University of Cambridge (UK)

Erasmus University (Brussels)

Makerere University (Uganda)

Elysium, Geneva (Switzerland)

University of Calgary (Canada)

University of Leuven (Belgium)

South-Valley University (Egypt)

University of Salzburg (Austria)

Beijing Normal University (China)

University of the South Pacific (Fiji)

Velammal Engineering College (India)

University of Limpopo (South Africa)

Nati Sci Lib, Chinese Acad of Sci (China)

Clinical & Biomedical Computing Ltd (UK)

Jonkoping University Engineering School (Sweden)

Universidad Nacional Autonoma de Mexico (Mexico)

Ministério da Ciência e Tecnologia e Inovação (Brazil)

Jaypee University of Information Technology (India)

Zakir Hussain College of Engineering & Technology (India)

Faculdade de Engenharia da Universidade do Porto (Portugal)

Centre Interdisciplinaire de Nanoscience de Marseille (France)


Http profiles ucdenver edu

http://profiles.ucdenver.edu


Profiles research networking software users group meeting profilestalyst harvard

University Spotlights

Harvard University

UCSF

University of Minnesota

U. Rochester Med Center

http://connects.catalyst.harvard.edu

http://profiles.ucsf.edu

http://profiles.ahc.umn.edu

http://urmc.rochester.edu/profiles

South Carolina

UConn Health Center

UMASS Medical School

Penn State

http://profiles.healthsciencessc.org

http://profiles.uconn.edu

http://profiles.umassmed.edu

http://profiles.psu.edu

Boston University

Wake Forest Medicne

RTRN (18 RCMI Institutions)

Baylor College of Med

http://profiles.tsi.wakehealth.edu

http://profiles.bumc.bu.edu

http://rtrnprofiles.rtrn.net/profilesweb

http://profiles.viictr.org


Profiles research networking software users group meeting profilestalyst harvard

Upcoming Events

  • VIVO Annual Conference, St. Louis, Missouri, August 14-16, 2013 [includes a Profiles RNS Workshop]

  • 3rd Global TechMining Conference (Text-mining, Analysis, and Visualization), Atlanta, Georgia, September 25, 2013

  • American Medical Informatics Association (AMIA) Annual Symposium, Washington, DC, November 16-20, 2013


Identifying translational science

Identifying Translational Science

  • T1-T4 is qualitative, no consensus on precise definition.

  • Can a bibliometric technique quantitatively identify translation?

  • Weber GM. Identifying translational science within the triangle of biomedicine. J Transl Med. 2013 May 24;11:126. doi: 10.1186/1479-5876-11-126.

  • http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23705970

Image from http://catalyst.harvard.edu


Research levels francis narin 1976

Research Levels - Francis Narin 1976

  • Narin assigns other journals to a level based on which prototype journals reference it most.

  • Grant Lewison (2004) classifies articles based on whether their titles include one of 100 “basic” or 100 “clinical” keywords.


Ach classification weber 2013

ACH Classification – Weber 2013

  • Based on MeSH terms assigned to articles

  • “H”: Humans

    B01.050.150.900.649.801.400.112.400.400 (Human),

    M01 (Person)

  • “A”: Animals

    B01 (Eukaryota) [except Human]

  • “C”: Cells and Molecules

    A11 (Cells), B02 (Archaea), B03 (Bacteria), B04 (Viruses),

    G02.111.570 (Molecular Structures),

    G02.149 (Chemical Processes)

  • If multiple terms then AC, AH, CH, ACH


Ach classification weber 20131

ACH Classification – Weber 2013


Profiles research networking software users group meeting profilestalyst harvard

Triangle of

Biomedicine


Profiles research networking software users group meeting profilestalyst harvard

Triangle of

Biomedicine:

Disciplines


Comparison to research levels

Comparison to Research Levels

C

AC

ACH

A

CH

AH

H

Basic

Research

Clinical

Medicine

C

Basic

Research

CH

AC

ACH

A

Clinical

Medicine

H

AH


Profiles research networking software users group meeting profilestalyst harvard

Triangle of

Biomedicine:

Changes over Time


Profiles research networking software users group meeting profilestalyst harvard

Triangle of

Biomedicine:

Citation

Flow


Profiles research networking software users group meeting profilestalyst harvard

Triangle of

Biomedicine:

Harvard Faculty


Profiles research networking software users group meeting profilestalyst harvard

Triangle of

Biomedicine:

Harvard Faculty


Limitations

Limitations

  • NLM takes a year or more to assign MeSH terms to articles.

  • Would the results be different using a commercial dataset?

  • “H” category very large. Should there be a “P” category for health practice?

  • Weber GM. Identifying translational science within the triangle of biomedicine. J Transl Med. 2013 May 24;11:126. doi: 10.1186/1479-5876-11-126. http://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23705970


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