Vocabulary knowledge center update
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Vocabulary Knowledge Center Update. VCDE Workspace July 21, 2011. Agenda. Tools Update Outreach Conferences and customers Knowledge Base Projects Knowledge Base Highlight Questions/Feedback. Tools Update Latest Releases. LexEVS 6.0 (2/1)

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Vocabulary Knowledge Center Update

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Vocabulary knowledge center update

Vocabulary Knowledge Center Update

VCDE Workspace

July 21, 2011


Agenda

Agenda

  • Tools Update

  • Outreach

    • Conferences and customers

  • Knowledge Base

  • Projects

  • Knowledge Base Highlight

  • Questions/Feedback


Tools update latest releases

Tools UpdateLatest Releases

  • LexEVS 6.0 (2/1)

    • Much anticipated release with pre-CTS2 functionality

    • Dev funding for 6.1 has paused temporarily

    • Open source opportunities (McGill University, BiKE)

  • NCI Protégé 1.4.3 (2/7)

    • Final release, before maintenance mode

  • LexWiki Publisher 2.0 (3/14)

    • Loads content from LexEVS into LexWiki

    • Very configurable, works on any terminology in LexEVS

Migration to JIRA complete


Tools update latest releases1

Tools UpdateLatest Releases

  • CDE Browser 4.0.2 (3/31)

  • NCBO BioPortal 3.1 (7/8)

  • CTS 2 Specification

    • Approved as a OMG beta specification

    • Please refer to the previous presentation for details


Outreach conferences

OutreachConferences

Past

Future

Past conferences

Future conferences

  • AMIA 2011 TBI/CRI Joint Summit (Freimuth, Tao, Jiang)

  • Seoul National University at Rochester (many)

  • OMG SOA in Healthcare (Solbrig, Peterson, Stancl)

  • ICBO (Tao, Jiang, Pathak, Freimuth)


Outreach customers

OutreachCustomers

New Tools fact sheet created for distribution

  • HSDB federation/OSU

    • OCRe Terminology curation set now

  • Center for Disease Control (CDC)

    • Reviewing PHIN VADS in light of CTS 2

  • TRANSFoRm (European Health Care)

    • Specifically interested in Value Sets

  • McGill University (Canada)

    • Published paper on NCI EVS and BioPortal (in French)

    • Collaboration on loader for ATC (drug statistics terminology supported by the WHO)


Outreach customers continued

OutreachCustomers (continued)

  • Queensland Health (Australia)

    • Local ontology development, tie into to controlled

  • Seoul National University (BiKE)

    • 5 years development on LexCare Suite (EVS from 2005)

    • MoU for collaboration

  • Astrazeneca

    • Interest in services, curation, and workflow practices

  • MOH Holdings (Singapore)

    • Tested LexEVS, wants to use REST, may write their own


Outreach customers continued1

OutreachCustomers (continued)

  • Universidade de Averio (Portugal)

    • ICD-9 to 10 mapping

    • Interested in mapping local to controlled

  • University of Ljubljana (Slovenia)

    • Raising awareness of NCI EVS to Ministry of Health

    • Preparing a comparision, LexEVS, Carecom, and one other

  • Cordelier Research Center

    • Wants to use LexEVS in distributed data warehouse


Knowledge base expanding the semantic universe

Knowledge BaseExpanding the semantic universe

  • Semantic Web Technology Interest Group (SemTIG)

  • Semantic Media Wiki concepts, technologies, resources

  • Introduction to the semantic web

  • NCI Term Browser install

  • Tool Roadmaps


Knowledge base expanding the semantic universe1

Knowledge BaseExpanding the semantic universe

  • LexEVS 5.x to 6.0 migration

  • Removal of old LexGrid.org site

  • Navigation and indexing of the LexEVS Javadocs

  • NCI Term Browser usage video

  • LexWiki Publisher video

  • Updated LexEVS “Remote API’ to “Distributed”


Projects now and on the horizon

ProjectsNow and on the horizon

  • Public relations for the soon-to-be NCI Value Set Browser

  • Ontology Representation Working Group

  • LexEVS bug fixes

  • Differences between NCI-m and NCI-t

  • Library of Documents organization

  • Chinese page updates


Projects now and on the horizon1

ProjectsNow and on the horizon

  • Migration from Media Wiki to Confluence

thesaurus.cancer.gov

ncit.cancer.gov

ncit.nci.nih.gov

nciterms.nci.nih.gov

NCI term browsers

wiki.nci.nih.gov

NCI wiki dashboard

evs.nci.nih.gov

NCI EVS (about terminologies & browsers)

VCDE work space

cancer.gov

NCI Cancer

(gov)

cabig.nci.nih.gov

caBIG community web site (all work spaces)

Redirects

ncicb.nci.nih.gov

Original NCI CB site

cabig-kc.nci.nih.gov/Vocab/KC

Vocabulary Knowledge Center

VCDE work space

Finding caBIG Tools

Down loads

GForge downloads


Vkc knowledge base highlight

VKCKnowledge Base Highlight

  • LexEVS Highlights(Main functions- qualifications)

    • Model

    • Authoring

    • Versioning

    • CTS

    • Mapping

    • Value Set

    • Pick List

  • Loaders

  • Exporters

  • Query

  • Web Services

  • Extensibility

  • Semantic Web

  • Other


Questions and feedback

Questions and Feedback

Email: [email protected]

Web site: http://cabig-kc.nci.nih.gov/Vocab/KC

Forums: https://cabig-kc.nci.nih.gov/Vocab/forums/

Follow us on Twitter: http://twitter.com/VocabKC


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