Bioinformatics for Vet. Part I

Bioinformatics for Vet. Part I Sung Youn Lee, PhD. Student Veterinary collage, Room 320 02 450 3719, 016 293 6059 leevet@paran.com

Course Overview • Syllabus – Tentative schedule • Books • Structure of class • Grading

Syllabus-Tentative schedule • Introduction to class • what bioinformatics can do for you • How most people use bioinformatics • Using sequence database • Working with a single DNA sequence • Working with a single protein sequence • Similarity search • Comparing • Protein structure • Working with RNA • Building phylogenetic tree

Books Image Source: http://www.amazon.com/

Structure of class • Introduction of topic • Available tools • Give answers

Grading • Homework(2~) 25% • Midterm test 25% • Final test 30% • Attendance 20%

Resouces • Medline : http://www.pubmed.com • SWISS-PROT : http://au.expasy.org/sprot • BLAST : http://www.ncbi.nlm.nih.gov/BLAST/ • BioTools : http://biotools.umassmed.edu/ • Molecular Toolkit : http://arbl.cvmbs.colostate.edu/molkit/ • Genescan : http://genes.mit.edu/GENSCAN.html • Dotlet : http://www.isrec.isb-sib.ch/java/dotlet/Dotlet.html • RCSB PBD : http://www.rcsb.org/pdb/ • Mfold : http://www.bioinfo.rpi.edu/applications/mfold/old/rna/ • ClustalW : http://www.ebi.ac.uk/clustalw/

Thank you for your attention ~

Bioinformatics for Vet. Part I