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Supplementary Figure 1

Supplementary Figure 1. Fraction of breakpoints assembled. 0 20 100 200 400 1000. Breakpoint homology ( bp ). Homology measured by Fosmid ESP in Kidd et al. Cell (2010),

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Supplementary Figure 1

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  1. Supplementary Figure 1 Fraction of breakpoints assembled 0 20 100 200 400 1000 Breakpoint homology (bp) Homology measured by Fosmid ESP in Kidd et al. Cell (2010), 562 deletion breakpoints were included in this experiment. Assessed were 8 low coverage samples in the 1000G Phase 3

  2. Supplementary Figure 2

  3. Supplementary Figure 3

  4. Unique1 Unique3 Repeat Unique2 Unique4 Supplementary Figure 4

  5. Supplementary Figure 5 homology Reference Contigs Reference Contigs

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