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Screenshots of Mutation Impact Ontology for Literature Mining. http://datam.i2r.a-star.edu.sg/mstrap/ A WORKFLOW FOR MUTATION EXTRACTION AND STRUCTURE ANNOTATION http://www.worldscinet.com/jbcb/05/0506/S0219720007003119.html. A. B. Mutant Locus : wNmP

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screenshots of mutation impact ontology for literature mining

Screenshots of Mutation Impact Ontology for Literature Mining

http://datam.i2r.a-star.edu.sg/mstrap/

A WORKFLOW FOR MUTATION EXTRACTION AND STRUCTURE ANNOTATION

http://www.worldscinet.com/jbcb/05/0506/S0219720007003119.html

slide3

A

B

Mutant Locus: wNmP

where w is wildtype, m is the mutant residue,

N is position of the wildtype and P is its actual position in the sequence.

slide4

Modifications to the Ontology: 2008

  • An \'Identifier\' class is created to capture
  • the different kinds of id\'s under one
  • superclass:
  • PubMed_ID => for grounding literature
  • UniProt_ID => for grounding protein names
  • GenBank_ID => for protein sequence
  • PDB_ID => for structure
  • Cosmic_ID => for grounding mutations
  • LiteratureSpecification now allows for
  • capturing different kinds of documents,
  • and also publication date. Both Sentences
  • and paragraphs can now be instantiated.

Ontology

Version2.0

  • Impact details now appear under
  • ImpactSpecification\'
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