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NLM Online Users’ Meeting May 24, 2010

NLM Online Users’ Meeting May 24, 2010. David Gillikin Chief, Bibliographic Service Division National Library of Medicine National Institutes of Health Department of Health & Human Services. Presentations. David Gillikin: Online Update Loren Frant: MedlinePlus & Go Local

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NLM Online Users’ Meeting May 24, 2010

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  1. NLM Online Users’ MeetingMay 24, 2010 David Gillikin Chief, Bibliographic Service Division National Library of Medicine National Institutes of Health Department of Health & Human Services

  2. Presentations • David Gillikin: Online Update • Loren Frant: MedlinePlus & Go Local • Maria Collins: DOCLINE & the Emergency Access Initiative • Questions • Presentations will be posted on the NLM Technical Bulletin: http://www.nlm.nih.gov/pubs/techbull/tb.html

  3. MEDLINE Indexing • FY2009 • 712,675 citations indexed for MEDLINE. • 6% increase over FY2008. • 82,932 gene indexing links created (12% increase over FY2008). • FY2010 • Anticipating an overall rate of around 718,000 articles indexed. • As of May 2010, 68% of the MEDLINE journals are now indexed from the online version.

  4. OLDMEDLINE Data • Over 64,000 citations added from the 1947 Current List of Medical Literature (CLML) to MEDLINE/PubMed (March 2010). • Working on mapping the citation keywords for the 1947 CLML citations to current MeSH. • In progress: 1946 CLML conversion.

  5. PubMed • Major effort this past year: PubMed Redesign, launched in the fall of 2009. • 3 Preview Webcasts held in the summer. • 4 Demonstration Webcasts provided during the introductory period. • Updates to the PubMed tutorial and training workbooks.

  6. PubMed • Advanced Search, Limits and Homepage further revised, based on feedback and usage analysis (January 2010): • Advanced Search page and Limits function separated into 2 different pages. • Links added above the Search Box. • Advance Search – Search Builder feature for searching and browsing by fields. • Homepage continues to add small changes to the new layout.

  7. Screen shot of PubMed highlighting Limits and Advanced search

  8. Screen shot of PubMed Limits screen

  9. Screen shot of PubMed Advanced Search screen

  10. Advanced Search - Preview

  11. PubMed – Additional Changes • New PubMed Batch Citation Matcher introduced, with results sent via email (November 2009). • Emailing of large search results restored (February 2010). • Citations for items in the BookShelf have begun to be included in PubMed (April 2010). • New Special Queries/Topic-Specific Queries: • Electronic Health Record Resources (January 2010). • Research Reporting Guidelines (January 2010). • Comparative Effectiveness Research (April 2010).

  12. Coming Very Soon • Updated design to Discovery Ads, with minimization feature to collapse content. • PubMed “Send to E-mail Abstract Format” enhanced: • Choose to include the additional data associated with a PubMed citation. • MeSH • Publication types

  13. Screen shot of upcoming PubMed feature to include MeSH and Other Data

  14. PubMed - MyNCBI • MyNCBI – new features and functions. • “Recent Activity” feature expanded to show up to 6 months of activity. • Customize “Search Results Display”. • Set default behavior for: • Displaying additional information (open/closed). • Auto Suggest function in search box (on/off). • Number of filters expanded to 15. • Bibliography function – user can create bibliography with citations from journals, books, etc.

  15. My NCBI / My Bibliography • New feature facilitates the management of publication compliance with the NIH Public Access Policy (January 2010). • eRA Commons users – Extramural principal investigators, grantees or applicants. • Link eRA Commons account with My NCBI/My Bibliography account. • New Awards View in My Bibliography provides compliance information.

  16. My Bibliography • Awards View • Check if listed publications are compliant. • Start Manuscript Submission Process. • Associate NIH extramural awards with publications. • Assign delegates to manage bibliographies. • Delegates must have their own MyNCBI account.

  17. My Bibliography – Awards View • Compliance Indicators: • Non compliant. • Citation has been submitted and is in process. • Citation is compliant and PMCID number displayed. • Not Applicable (N/A) label – articles submitted prior to April 7, 2008 and are not covered by the policy. • Question Mark (?) – more information is needed before compliance status can be indicated. • Compliance Wizard available.

  18. Screen shot showing graphical representations of Non-compliant, In Process, Complete, Not applicable, and question mark.

  19. PubMed – Upcoming in late 2010 • Introduction of a researcher/author identifier. • Focusing initially on grantees and their publications – it’s what we know about. • Expanding to other MyNCBI users. • Search disambiguation. • MyNCBI Redesign

  20. PubMed NLM Theater Presentations • PubMed Review. • Using My Bibliography to Manage Compliance with the NIH Public Access Policy. • Introduction to NCBI Molecular Databases.

  21. PubMed Central • PMC statistics as of May 1, 2010 • Over 590 fully participating journals. • Over 1.97 million articles. • PMC Canada - launched January 2010 • Collaboration between NLM, the Canadian Institutes of Health Research (CIHR), and the Canada Institute for Scientific and Technical Information (NRC-CISTI). • CIHR now a granting organization within MEDLINE/PubMed; data carried in the Grant (GR) field.

  22. PMC Embargoed Documents • PMC search feature to see embargoed articles, including author manuscripts. • Limits feature - select “Show both free and embargoed articles.” • Results shown in separate tabs. • NLM Technical Bulletin article “PubMed Central Releases New Search Option for Embargoed Articles.” http://www.nlm.nih.gov/pubs/techbull/so09/so09_pmc_embargoed_articles.html

  23. PMC Screen of PMC showing Limits and “Show both free and embargoed articles”

  24. PMC Screen shot of search results highlighting number of embargoed articles

  25. LinkOut • Usage as of May 1 • 8,063 journals with LinkOut links. • Activity: 29 million hits/month; 1.1 million/work day. •  LinkOut for Libraries program: • 2,350 Libraries participating • 720 Libraries participating in Outside tool • PubMed • 55.6% have full text links (87.1% from 2000 on). • 15.2% have free full text links (21.73% from 2000 on).

  26. LinkOut • 5 New Quick Tour training modules • Library Submission Utility: An Introduction. • Retrieving Your Password for the Library Submission Utility. • Library Submission Utility: Print Holdings. • Library Submission Utility: Finding Journals. • Library Submission Utility: Entering Online Holdings Information.

  27. LinkOut LinkOut User meeting Tuesday May 24 3:30 pm – 5:00 pm Location: Lincoln West

  28. Unified Medical Language System (UMLS) • UMLS Releases: • 2009AB release – November 3, 2009. • 2010AA release – May 3, 2010. • UMLS Web site reorganization in September. • Webcast on UMLS Web Site Changes (September 2009) • Upcoming Webcast June 9, 2010. • From Source to Metathesaurus Format: New Source Release Documentation

  29. NLM Technical Services Division • Cuttering Practices – Cutter number will no longer be provided in LocatorPlus on June 21, 2010. • NLM Classification 2010 edition released. • http://www.nlm.nih.gov/class/ • WX (Hospitals and Other Health Facilities) • WY (Nursing) • NLM Technical Bulletin article: • http://www.nlm.nih.gov/pubs/techbull/ma10/ma10_classification.html

  30. NLM Technical Services Division • Online tutorials: • Using Medical Subject Headings (MeSH) in Cataloging. http://www.nlm.nih.gov/tsd/cataloging/trainingcourses/mesh/index.html • Cataloging: Fundamentals of the NLM Classification. http://www.nlm.nih.gov/tsd/cataloging/trainingcourses/classification/index.html

  31. Specialized Information Services (SIS)

  32. Specialized Information Services (SIS) • TOX MAP • 2008 Toxics Release Inventory (TRI) data added. • Search feature – view search results in Google Maps and Google Earth. • Redesign for the TOXMAP FAQ. • ToxLearn – launched Dec 2009 • Joint project with the U.S Society of Toxicology. • Multi-module online learning tool that provides an introduction to toxicology; module 1 released ("Introduction to Toxicology and Dose-Response"). • http://toxlearn.nlm.nih.gov/

  33. ToxLearn

  34. Specialized Information Services (SIS) • ToxTown • Nanoparticles page – brief summary of nanotechnology and links to additional resources. Spanish language version (Nanoparticulas) available. • Bisphenol A (BPA) page – exposure information for this substance found in light weight plastics. • Haz-Map – addition of 265 agents, including: • 60 different metal compounds. • 100 rare earth metals. • 10 uranium compounds. • 16 metallic perchlorate compounds. • WISER for Windows 4.3 version released in November 2009.

  35. Specialized Information Services (SIS) • Radiation Event Medical Management (REMM) • New version released April 2010. • Disaster Information Management Research Center (DIMRC) • NLM Disaster Preparedness and Response Web Links. • Resources on different topics, including Chile and Haiti Earthquake, Oil Spills, Hurricanes, and more. • NLM Theater presentation on product updates. • Disaster Health Information • Drug, Toxicology, and Environmental Health

  36. ClinicalTrials.gov • Dr. Deborah Zarin, Director of ClinicalTrials.gov Speaking at the NLM Update Tuesday, May 25, 9:00 am – 10:00 am. • 7 ClincialTrials.gov QuickTours launched in April 2010. • NLM Theater presentations.

  37. Additional Resources • DailyMed: http://dailymed.nlm.nih.gov/ • Contains information on over 7,550 approved prescription drugs. • MyMedicationList: http://mml.nlm.nih.gov • Prototype application to help users manage their medication lists and make the records readily available when needed. • NLM Theater presentations on these topics as well as RxNorm.

  38. NLM and Social Media • Directory of social media features from NLM http://www.nlm.nih.gov/socialmedia • Links to NLM entries for: • Twitter • Facebook • RSS, Podcasts, Webcasts • Email lists

  39. NLM Social Media

  40. Thank you! Please stop by the NLM booth for additional information, the NLM Theater presentations, and to give us your feedback.

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