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A. B. C. D. FAMA. OSM2. STKR. HP. 3.0. 12. 200. 5.0. 300. 30. 2.5. 5.0. 2.5. 10. 4.0. 250. 25. 150. 2.0. 4.0. 2.0. 8. RT-qPCR (FC). RT-qPCR (FC). RT-qPCR (FC). RT-qPCR (FC). 200. 20. 3.0. RNA-seq (FPKM). RNA-seq (FPKM). RNA-seq (FPKM). RNA-seq (FPKM). 1.5. 3.0.

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1 0

A

B

C

D

FAMA

OSM2

STKR

HP

3.0

12

200

5.0

300

30

2.5

5.0

2.5

10

4.0

250

25

150

2.0

4.0

2.0

8

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

200

20

3.0

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

1.5

3.0

1.5

100

6

150

15

2.0

1.0

2.0

1.0

4

100

10

50

1.0

0.5

1.0

2

0.5

50

5

0

0.0

0

0.0

0

0.0

0

0

C

T39

C+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

E

F

G

H

WRKY-C2

WRKY1

CHS3

ARF

2.0

6.0

100

3.0

40

15

1.5

5.0

1.5

2.5

1.5

75

30

4.0

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

2.0

1.0

10

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

1.0

1.0

3.0

50

1.5

20

2.0

1.0

5

0.5

0.5

0.5

25

10

1.0

0.5

0

0.0

0

0.0

0

0.0

0.0

0.0

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

I

J

K

L

COL

MAPK

PP2C

PPO

8.0

60

7.0

20

20

2.0

1.0

10

6.0

50

6.0

0.8

15

1.5

8

15

5.0

40

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

4.0

0.6

6

4.0

30

10

1.0

10

3.0

0.4

4

20

2.0

2.0

5

0.5

5

0.2

2

10

1.0

0

0.0

0

0.0

0

0.0

0

0.0

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

M

N

O

P

CAB

Chit3

OSM1

AP2

1.2

500

5.0

700

10

2500

20

4.0

600

1.0

400

4.0

8

2000

500

15

0.8

3.0

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

300

3.0

6

400

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

1500

0.6

10

2.0

300

200

2.0

4

1000

0.4

200

5

1.0

100

1.0

2

500

0.2

100

0

0

0.0

0

0.0

0.0

0

0

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

Q

R

S

T

INV1

RLK

UspA

ABC-C

14

1.4

4.0

100

12

100

12

1.2

80

8.0

10

80

3.0

10

1.0

75

60

6.0

8

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

60

8

RNA-seq (FPKM)

RNA-seq (FPKM)

RNA-seq (FPKM)

0.8

2.0

6

50

0.6

6

40

4.0

40

4

0.4

4

1.0

25

2.0

20

20

2

2

0.2

0

0

0

0.0

0

0.0

0

0.0

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

U

V

W

X

SS

ERF

LK

WRKY-C10

20

100

2.0

5.0

3.0

14

125

12

2.5

4.0

75

100

15

75

1.5

10

2.0

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

RT-qPCR (FC)

3.0

75

RNA-seq (FPKM)

RNA-seq (FPKM)

8

RNA-seq (FPKM)

RNA-seq (FPKM)

50

10

50

1.0

1.5

6

2.0

50

1.0

4

25

0.5

5

25

1.0

25

0.5

2

0.0

0

0.0

0

0

0

0

0.0

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

C

T39

C+P.v.

T39+P.v.

RNA-seq (FPKM)


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