Intron evolution supplemental
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Intron Evolution Supplemental. Kemin Zhou Jan 14, 2011. 0.1. 7.29. Basidiomycota. cryneo1. 7.32. Agaricomycetes. copci1. 7.89. Lacbi1. 7.21. Tremellomycetes. Pospl1. Sporo1. 6.90. 7.08. Phchr1. Pucciniomycotina. Batde5. 5.9. Agaricomycotina. Chytridiomycota. 1.68. 80.

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Intron Evolution Supplemental

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Intron evolution supplemental

Intron Evolution Supplemental

Kemin Zhou

Jan 14, 2011


Intron evolution supplemental

0.1

7.29

Basidiomycota

cryneo1

7.32

Agaricomycetes

copci1

7.89

Lacbi1

7.21

Tremellomycetes

Pospl1

Sporo1

6.90

7.08

Phchr1

Pucciniomycotina

Batde5

5.9

Agaricomycotina

Chytridiomycota

1.68

80

ustma1

Ustilaginomycotina

Mucoromycotina

Phybl1

6.18

Pezizomycotina

Saccharomycotina

64

Picst3

1.44

Mycfi1

2.49

Eurotiomycetes

Dothideomycetes

Mycgr1

Necha2

3.33

2.48

Trive1

Ascomycota

Trire2

3.35

3.31

Aspni1

Sordariomycetes

3.76

Figure S1.


Intron evolution supplemental

10

10

20

Aspni1

Mycfi1

Mycgr1

8

8

Necha2

40

15

6

6

10

4

4

20

5

2

2

0

0

0

0

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

10

10

10

10

copci1

8

8

8

Picst3

Trire2

Trive1

8

6

6

6

6

4

4

4

4

2

2

2

2

0

0

0

0

Counts

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

10

10

10

40

cryneo1

8

Pospl1

8

8

Lacbi1

Phchr1

30

6

6

6

20

4

4

4

10

2

2

2

0

0

0

0

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

10

10

10

10

Phybl1

Sporo1

8

8

8

8

ustma1

Batde5

6

6

6

6

4

4

4

4

2

2

2

2

0

0

0

0

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

0

2000

4000

6000

Length (Nucleotides)

Figure S2.


Intron evolution supplemental

Pospl1

p-value: 0.01845

Mycfi1

18.0

Lacbi1

Phybl1

Necha2

Mycgr1

log Genome Size

17.5

Trive1

Aspni1

copci1

Phchr1

Trire2

Batde5

17.0

Sporo1

ustma1

cryneo1

Picst3

16.5

2

3

4

5

6

7

log Number of RT

Figure S3.


Intron evolution supplemental

Phybl1

Batde5

4.6

ustma1

Mycgr1

Trire2

4.5

Mycfi1

Sporo1

4.4

Pospl1

Trive1

Mean ln (intron length (nt))

4.3

Picst3

Aspni1

4.2

Lacbi1

Necha2

copci1

cryneo1

4.1

Phchr1

9

10

11

12

13

14

ln (Total RTF Length (nt))

Figure S4.


Intron evolution supplemental

5

All

Mean ln(Intron Length (nt))

Between

4.8

Phylum

4.6

Species

4.4

4.2

4

3.8

3.6

Mycfi1

Trire2

Trive1

Picst3

Phybl1

Mycgr1

Lacbi1

copci1

Aspni1

Batde5

Phchr1

Pospl1

Sporo1

cryneo1

ustma1

Necha2

Figure S5


Intron evolution supplemental

A

Intron Length Difference (SSG-GCAS)

70

60

50

40

30

B

Novel

20

10

Intron Length

Old

0

With Elements

-10

-20

Trive1

Trire2

Picst3

Phybl1

Pospl1

copci1

ustma1

Sporo1

Lacbi1

Phchr1

Mycfi1

Mycgr1

Aspni1

Batde5

y

cryneo1

Necha2

z

x

Time

Figure S6.


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