Opensim description status and plans science advisor workshop june 1 2 2006
This presentation is the property of its rightful owner.
Sponsored Links
1 / 29

OpenSim Description, Status, and Plans Science Advisor Workshop June 1-2, 2006 PowerPoint PPT Presentation


  • 70 Views
  • Uploaded on
  • Presentation posted in: General

OpenSim Description, Status, and Plans Science Advisor Workshop June 1-2, 2006. Clay Anderson , Ayman Habib, Pete Loan, and Scott Delp. What is OpenSim?. Object-Oriented Framework for the Simulation, Control, and Analysis. OpenSim, Gait Workflow. OpenSim API. CVODE, RootSolve, SQP, SA,

Download Presentation

OpenSim Description, Status, and Plans Science Advisor Workshop June 1-2, 2006

An Image/Link below is provided (as is) to download presentation

Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author.While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server.


- - - - - - - - - - - - - - - - - - - - - - - - - - E N D - - - - - - - - - - - - - - - - - - - - - - - - - -

Presentation Transcript


Opensim description status and plans science advisor workshop june 1 2 2006

OpenSimDescription, Status, and PlansScience Advisor WorkshopJune 1-2, 2006

Clay Anderson, Ayman Habib, Pete Loan, and Scott Delp


What is opensim

What is OpenSim?

Object-Oriented Framework for the Simulation, Control, and Analysis

OpenSim, Gait Workflow

OpenSim API

CVODE, RootSolve, SQP, SA,

LAPACK, Simbody

Developers:

Clay Anderson (Framework)

Ayman Habib (Applications)

Peter Loan (Musculographics / SIMM)

Saryn Goldberg, May Liu, Ilse Jonker, Jen Hicks, Chand John, … … … …


Original plan nuclear bomb

Original Plan (Nuclear Bomb)


Chief design goals

Chief Design Goals

  • Speed

  • Shareable code

  • Extensibility

  • Different Entry Levels

    • Algorithms

    • Modeling API

    • Scripting

    • Graphical User Interface

Matlab!


Opensim description status and plans science advisor workshop june 1 2 2006

OpenSim API

RKF 5-6

CVODE

Simbody


Some code

Some Code

  • Like SIMM Dynamics Pipeline but using C++.

  • Platform independent

    • Windows

    • Mac

    • Linux

    • Other Unix flavors

  • CMake is a cross-platform compile system (www.cmake.org)

  • Swig is an automated wrapper generation facility

    • Java


Lowering the barrier for developers and users

Lowering the barrier for developers and users

  • Examples

    • Sample code

    • Templates for extending OpenSim (analyses, actuators, controllers)

  • Documentation

    • OpenSim Developer’s Guide

    • OpenSim API Reference (Doxygen)

  • Streamlined installation

  • Training

    • Workshops directed at solving your problems

  • Graphical User Interface (GUI)


Making simulation accessible opensim gui

Making Simulation Accessible- OpenSim GUI

Animation Playback

Data, Model,and SimulationNavigator

3D Visualization using VTK

Plotting

Simulation Progress

Command and Scripting Window


Investigations and workflows

Investigations and Workflows

  • Investigation- equivalent to something you’d normally write in a main routine

    • Optimization study

    • Inverse dynamics study

  • Workflow- a set of investigations

    • Gait Workflow

    • Subject-specific Simulation Workflow


Gait workflow

Step -1

Preprocess Experimental Data

Gait Workflow


Execution of the gait workflow currently

Execution of the Gait Workflow currently

% scale –Setup 900045_setup_scale.xml (seconds)

% ik –Setup 900045_setup_ik.xml (minute)

% rra –Setup 900045_setup_rra.xml (10 minutes)

% cmc –Setup 900045_setup_cmc.xml (10 minutes)

% perturb –Setup 900045_setup_perturb.xml (hours)

Should we develop facilities for executing workflows in a GUI?

  • Main OpenSim GUI

  • Stand-alone wizard


Preliminary release schedule

April 2006 OpenSim 0.5 (alpha)

June 2006 OpenSim 0.6 (alpha)

Use of OpenSim name space

Consistency in class names and file storage

Dependent on SIMM and SDFast

Sept 2006 OpenSim 0.7 (alpha)

API supports SIMM modeling features, switching dynamics engines and integrators

SIMM muscles native

GUI for visualizing models with muscles

Wizard for executing the gait workflow

Dec 2006 OpenSim 0.8 (alpha)

Simbody and CVODE available in OpenSim

80% of SIMM modeling features in GUI

No more dependence on SIMM / SDFast

documenting and testing

Mar 2007 OpenSim 0.9 (beta)

Streamlined installation

documenting and broader testing

June 2007 OpenSim 1.0

80% SIMM functionality

Simbody, CVODE

Gait Workflow

Documentation

Examples and pre-made simulations

Materials for a short course

August 2007 Dissemination Event

Tutorials adjunct to ASBAnnual Meeting

Preliminary Release Schedule


Some questions

Some Questions…

  • Do we need additional concepts in OpenSim?

    • sensors, contact, …

  • How important is interfacing with Matlab?

  • What SIMM features are priorities?

  • What new things would be most compelling to you?

    • control, dynamic optimization, speed, …

  • When should we engage users? Who?

  • Are we being too ambitious?

  • Are there some simple wins, killer apps?

  • What should we be thinking about beyond the next year?

    • “Directed Reductionism” and Sherm’s Modeling Layer


Acknowledgements

Acknowledgements

Supported by the National Institutes of Health

through the

NIH Roadmap for Medical Research Grant U54 GM072970.

NIH HD45109, HD38962, HD33929


Why use opensim

Why use OpenSim?

  • Many of the capabilities of SIMM

  • Choice of dynamics engines

    • SD/Fast (proven, but costs and requires compile step)

    • Simbody (free, no compile step, everything but loop joints)

  • Choice of integrators

    • RKF, CVODE, …

  • Pipeline for creating simulations from MoCap

    • CMC, …

  • Analyses

  • Extensible (plugins)

    • New actuators, controllers, analyses, …


Clinical importance

Clinical Importance

  • Movement disorders are a challenging problem.

  • The causes are not well understood.

  • Muscles are the targets of treatments.

  • Treatments are often unsuccessful.

Asakawa et al. (2004)

J Bone Jnt Surg


Subject specific simulation

Subject-Specific Simulation

1.18 m/s

78 kg, 1.78 m

19 DOF, 92 Muscles (Delp, 1990)

3 dofback

6 dofpelvis

3 dof

hips

1 dof

knees

1 dof

ankles

~1° Tracking Accuracy

~20 min computer time


Simulations generated with cmc

Simulations Generated with CMC

Each generated with less than 10 minutes of CPU time.


Limitations of cmc

Limitations of CMC

  • CMC is a tracking algorithm, not well suited for predicting emergent behavior.

    • Generating a simulation that replicates a subject’s gait cycle.

    • Solving for the theoretically most-efficient gait cycle.

  • CMC is dependent on the quality of the input data.

    • Kinematics

    • Ground reaction forces


Computed muscle control

Computed Muscle Control

Step 1:Compute Desired Accelerations (PD Control)

velocityerrors

positionerrors


Computed muscle control1

Computed Muscle Control

Step 2:Solve for Muscle Excitations

a) Integrate forward by T (0.010) to compute and .

b) Solve static optimization problem to find to achieve .

c) Root solve to find the muscle excitations that will generate .


Computed muscle control2

Computed Muscle Control

Step 3: Integrate from t to t+T


Computed muscle control3

Computed Muscle Control

Step 1

Step 2

Step 3

Repeat Steps 1, 2, and 3, until the final time is reached.


Different causes suggest different treatments

Different Causes Suggest Different Treatments


Number of 3d muscle actuated simulations of gait

Number of 3D, Muscle-Actuated Simulations of Gait

Liu, Jonkers, Arnold,

Thelen, Anderson, Delp

(92 Muscles)

Number

Hase et al.,

Sellers et at.

(~60 Muscles)

Yamaguchi & Zajac

(9 Muscles)

Anderson & Pandy

(54 Muscles)


Perturbation analysis

Perturbation analysis

*Hold other active forces constant


Comparison of joint moments

Comparison of Joint Moments


Knee extension in early swing for 6 subjects at 4 speeds

Average Knee Acceleration

Extension Phase

ext deg/s2flex

Knee Extension in Early Swing for 6 Subjects at 4 Speeds

All Subjects

All Speeds

% of total


  • Login