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SCIRun/BioPSE Tutorial: Networks, Datasets, Tutorials, and PowerApps

This tutorial introduces users to SCIRun/BioPSE, covering dataflow programming, common modules, and datatypes. It also includes practical applications, such as solving bioelectric finite element problems and visualizing electric fields.

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SCIRun/BioPSE Tutorial: Networks, Datasets, Tutorials, and PowerApps

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  1. BioPSE Examples: Networks, Datasets, Tutorials, and PowerApps

  2. Example Networks (Nets) • Located in SCIRun/src/{PKG}/nets/ • Major nets (applications) • Minor nets (module demos)

  3. build-fem-elem-leadfield.net

  4. dipole-localization-leadfield-vis.net

  5. build-misfit-and-localize.net

  6. Example Networks (Nets) • Located in SCIRun/src/{PKG}/nets/ • Major nets (applications) • Minor nets (module demos)

  7. showmatrix.net

  8. show-text.net

  9. Example Datasets

  10. SCIRun/BioPSE Tutorial • Introduction to SCIRun/BioPSE for new users • Dataflow Programming • SCIRun Architecture • Common Modules • Datatypes

  11. SCIRun/BioPSE Tutorial • Introduction to SCIRun/BioPSE for new users • Dataflow Programming • SCIRun Architecture • Common Modules • Datatypes Get the user comfortable in the SCIRun/BioPSE environment

  12. SCIRun/BioPSE Tutorial • Illustrates practical application of SCIRun/BioPSE • Solve the bioelectric finite • element forward problem • Allow the user to visualize • the electric field BioPSE Package forward-fem.net

  13. Power Apps • Problem specific applications • Hide the complexities of dataflow • Provide a simplified graphical • user interface • Focus on a specific task

  14. Power Apps Processing Pane Guide the user through specific processing steps

  15. Power Apps Visualization Pane Provide different visualization options

  16. BioFEM Encapsulation of the forward-fem network • Change datasets • Streamlines • Isosurfaces • Electrodes http://software.sci.utah.edu/doc/User/Tutorials/BioFEM/BioFEM.html

  17. BioTensor • Diffusion Tensor Imaging • Processing Steps • Data Acquisition • Registration • Building Tensors • Visualization Options • Planes • Isosurfaces • Glyphs • Fibers

  18. BioTensor • Diffusion Tensor Imaging • Processing Steps • Data Acquisition • Registration • Building Tensors • Visualization Options • Planes • Isosurfaces • Glyphs • Fibers

  19. BioTensor • Diffusion Tensor Imaging • Processing Steps • Data Acquisition • Registration • Building Tensors • Visualization Options • Planes • Isosurfaces • Glyphs • Fibers http://software.sci.utah.edu/doc/User/Tutorials/BioTensor/BioTensor.html

  20. Power App Benefits Hides a large network

  21. Power App Benefits Simplifies the GUI

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