1 / 26

Peter Arzberger Philip Papadopoulos Mason Katz Cindy Zheng

Overview of PRAGMA View to the Future Examples of Team Science and Global Engagement in Asia Pacific and South Asia. Peter Arzberger Philip Papadopoulos Mason Katz Cindy Zheng Enhancing Research and Education Connectivity to and within South Asia 26 April 2007 Spring Internet2 Meeting.

armine
Download Presentation

Peter Arzberger Philip Papadopoulos Mason Katz Cindy Zheng

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Overview of PRAGMA View to the FutureExamples of Team Science and Global Engagement in Asia Pacific and South Asia Peter Arzberger Philip Papadopoulos Mason Katz Cindy Zheng Enhancing Research and Education Connectivity to and within South Asia 26 April 2007 Spring Internet2 Meeting

  2. Some Perspectives: Do they apply to you? Spread of Infectious Diseases Health of Oceans Health of Coral Reefs Impacts of Global Warming Role of Lakes in Carbon Cycling • “…The conduct of science, intrinsically global, has become increasingly important to addressing critical global issues….” [NSB 2000] • “ It is imperative that the ACP [Advanced Cyberinfrastructure Program] interoperate with cyberinfrastructure being developed and deployed in other countries.” [Atkins et.al. 2003 ] • “What nations don’t know can hurt them. The stakes involved in study abroad are that simple, that straightforward, and that important. … college graduates today must be internationally competent.” [Lincoln Report 2005] Avoid Replay of Cluster Divergence Grids Support Global Science Tools Developed Across Globe People Make Collaborations Delivered by Philip Papadopoulos, NSF Global Engagement Workshop

  3. Education & Capacity Building Sustained Collaboration • Build teams and • trust • Many meetings • Develop human resources • Students and postdocs Science Drivers Enabling Technology • Advance science • Stream Data • Dist.Files System • Web Services • Cross-site query • Collaborative Tools • Many more • Focus development • Source, movement, • fate of carbon in lakes • Role of Savannah Burns • on Monsoons • Active sites of infectious • agents Persistent Infrastructure • Broaden impact • Software, data • Lambda Grids • Wireless sensor network e-science’s Team Science: Merging of Science and Information Technology Previously Unobtainable Observations and Understanding

  4. PRAGMA Overarching Goals Strengthen Existing and Establish New Collaborations Work with Science Teams to Advance Grid Technologies and Improve the Underlying Infrastructure In the Pacific Rim and Globally “A Practical Collaborative Framework”. http://www.pragma-grid.net

  5. Workshops and Organization Information Exchange Planning and Review New Collaborations New Members Expand Users Expand Impact Routine Use Lab/Testbed Testing Applications Building Grid and GOC Multiway Dissemination Key Middleware Overview and ApproachProcess to Promote Routine Use Team Science Application-Driven Collaborations Applications Middleware Outcomes Improved middleware Broader Use New Collaborations Transfer Tech. Standards Publications New Knowledge Data Access Education

  6. Applications and Middlewarehttp://goc.pragma-grid.net/applications/default.html • Real science applications pair and drive middleware development • Achieve long-run and scientific results • Open to applications of all scientific disciplines • Climate simulation • Savannah/Nimrod (MU, Australia) • MM5/Mpich-Gx (CICESE, Mexico; KISTI, Korea) • Quantum-mechanics, quantum-chemistry: • TDDFT, QM-MD, FMO/Ninf-G (AIST, Japan) • Genomics • iGAP/Gfarm/CSF (UCSD, USA; AIST, Japan; JLU, China) • HPM: genomics (IOIT-HCM, Vietnam) • mpiBlast/Mpich-G2 (ASGC, Taiwan) • Organic chemistry • Gamess-APBS/Nimrod (UZurich, Switzerland) • Molecular simulation • Siesta/Nimrod (UZurich, Switzerland; MU, Australia) • Amber/Rsh ( USM, Malaysia) • Compute Science • Load Balancer (VAST-HCM, Vietnam) • GriddLeS (MU, Australia) Source: Cindy Zheng

  7. PRAGMA Grid Testbed JLU China CNIC GUCAS China AIST OsakaU UTsukuba TITech Japan NCSA USA CNIC AIST UZurich Switzerland KISTI Korea BU USA UUtah USA SDSC USA SDSC LZU China ASGC NCHC Taiwan ASGC UMC USA CICESE Mexico UoHyd India CUHK HongKong UNAM Mexico NECTEC ThaiGrid NECTEC ThaiGrid Thailand IOIT-HCM Vietnam ASURC Costa Rica APAC QUT Australia MIMOS USM Malaysia BII IHPC NGO Singapore UCN Chile NGO BESTGrid New Zealand UChile Chile MU Australia 32 Clusters from 29 institutions in 14 countries/regions (+ 7 in preparation) 7 gfarm sites Source Cindy Zheng

  8. PRAGMA Testbed ran CSIRO climate model called CCAM in combination with Nimrod/G tool set. Executed on a maximum of 90 processors (out of a maximum 159) across 7 PRAGMA grid resources located in Australia, Japan, Korea, Taiwan, Thailand and the U.S. David Abramson, Amanda Lynch Savannah Burn:How tightly linked are burning, vegetation, and rainfall?

  9. Validation of Cyberinfrastructure Investmentsby the Savannah Burn experiment • Science Resulted: The hypothesis that burning the Savannah can affect the strength and timing of the monsoon was confirmed. • Testbed Exercised: The testbed operated for 170 days, and delivered over 1.25 million processor hours! Importantly, we were able to do a live upgrade of a number of the cyberinfrastructure components during the period. • Middleware Improved: Improved Nimrod's ability to schedule computations by incorporating both data location and transport delays. • Allowing it to make a better choice of resources, improving the performance of the system as well as its fault tolerance. • We also enhanced Nimrod's ability to handle faults in the Grid testbed. • Policy Impacted: The experiment shipped some 1.6TB of data across national and international networks. This exposed some interesting features of Australia’s network charging policy, and will lead to lasting improvements.

  10. Collaborations With Science and Technology Teams • Grid security • Naregi (Japan), APGrid, GAMA (SDSC, USA) • Grid infrastructure • Monitoring - SCMSWeb (ThaiGrid, Thailand) • Accounting - MOGAS (NTU Singapore) • Metascheduling - Community Scheduling Forum (JLU, China) • Cyber-environment - CSE-Online (UUtah, USA) • Rocks and middleware (SDSC, USA; …) • Ninf-G, SCE, Gfarm, Bio, K*Rocks, Condor, … • Datagrid, sensor, network • Gfarm-fuse (AIST, Japan) • GEON data network • GLEON sensor network • OptIPuter - High performance networked TDW, Telescience Source: Cindy Zheng

  11. Grid Interoperation Experimentshttp://goc.pragma-grid.net/wiki/index.php/Main_Page#Grid_Inter-operations • OGF – Grid Interoperation Now (GIN), GIN-OPS • GIN testbed (February, 2006 – on-going) • TDDFT/Ninf-G (PRAGMA - AIST, Japan) • PRAGMA, TeraGrid, OSG, NorduGrid; EGEE • Savanah fire simulation (PRAGMA - MU, Australia) • PRAGMA, TeraGrid, OSG • Multi-Grid monitoring • SCMSWeb probe matrix (PRAGMA - ThaiGrid, Thailand) • Common schema (PRAGMA, TeraGrid, EGEE, NorduGrid) • Peer-grid interoperation experiments • PRAGMA->TeraGrid (October, 2006 – on-going) • PRAGMA member runs application across both grids • QM/MD/Ninf-G (AIST, Japan) • Manual reservation, 7 sites in PRAGMA, 3 sites in TeraGrid • OSG<->PRAGMA (January, 2007 – on-going) • Members from both grids run applications across both grids • OSG - Spatial Interpolation (UIowa, USA) • PRAGMA - FMO/Ninf-G (AIST, Japan) • OSG - FermilabGrid • PRAGMA – SDSC, USA; NECTEC, Thailand; NGO, Singapore; ThaiGrid, Thailand Source: Cindy Zheng

  12. PRAGMA Highlights of2006 - 2007 • Simulating the Australian Monsoon and the Effect of Wildfires • PRAGMA Biosciences Portal • PRAGMA Leads Application Experiment of Grid Interoperation in GIN Testbed • PRAGMA Establishes Certificate Authority (CA) Using Naregi-CA Software • Expanding the Collaboration Grid • Building Communities, Catalyzing Collaborations • PRIME and PRIUS • More accomplishments in the Working Group sections

  13. Collaborate in Publishing Research ResultsSome Publications 2006 • Arzberger P, Papadopoulos P. PRAGMA: Example of Grass-Roots Grid Promoting Collaborative EScience Teams. CTWatch. Vol 2, No. 1 Feb 2006. www.ctwatch.org/quarterly/articles/2006/02/pragmaexample-of-grass-roots-grid-promoting-collaborativee-science-teams • Abramson D, Lynch A, Takemiya H, Tanimura Y, Date S, Nakamura H, Jeong K, Hwang S, Zhu J, Lu Z, Amoreira C, Baldridge K, Lee H, Wang C, Shih HL, Molina T, Li, W, Arzberger P. Deploying Scientific Applications on the PRAGMA Grid testbed: Ways, Means and Lessons. IEEE/CCGRID International Workshop on Grid Computing, 2006, Singapore. • Lee B-S, Tang M, Zhang J, Soon O Y, Zheng C, Arzberger P. Analysis of Jobs on a Multi-Organizational Grid Testbed. IEEE/CCGRID Int’l Workshop on Grid Computing, 2006, Singapore. • Zheng C, Abramson D, Arzberger P, Ayuub S, Enticott C, Garic S, Katz M, Kwak J, Lee B S, Papadopoulos P, Phatanapherom S, Sriprayoonsakul S, Tanaka Y, Tanimura Y, Tatebe O, Uthayopas P. The PRAGMA Testbed: Building a Multi-Application International Grid. 2005 IEEE/CCGRID International Workshop on Grid Computing, 2006, Singapore. • Li WW, Arzberger PW, Yeo CL, Ang L, Tatebe O, Sekiguchi S, Jeong K, Wuang S, Date S, Kwak JH. Proteome Analysis Using iGAP in Gfarm. The Second International Life Science Grid Workshop 2005, Grid Asia 2005, Singapore 2005. • Wei X, Ding Z, Li W W, Tatebe O, Jiang J, et al. GDIA: A Scalable Grid Infrastructure for Data Intensive Applications. IEEE Int’l Conference on Hybrid Information Technology, ICHIT 2006, Cheju Island, Korea. • Krishnan S, Baldridge K K, Greenberg J. P, Stearn B, Bhatia K. An End-to-End Web Services-Based Infrastructure for Biomedical Applications. Proceedings of Grid 2005, 6th IEEE/ACM Int’l Workshop on Grid Computing, November 13-14, 2005, Seattle, WA, U.S.

  14. PRIME: Providing Students International Interdisciplinary Research Internships and Cultural Experiencespreparing the global workplace of the 21st century • Computer Network Information Center (CNIC), Chinese Academy of Sciences • Cybermedia Center (CMC), Osaka University, Japan • Monash University, Australia • National Center for High-performance Computing (NCHC), Taiwan • Built on top of PRAGMA people network • Dual Mentors; Pre/post research apprenticeship • Cultural competency preparation • What’s Up with Culture • Professional development seminars • A Pilot Project for Global Engagement PRIME Class 2006 prime.ucsd.edu

  15. Fostering of Globally-Leading Researchers in Integrated Science (PRIUS) Educational Network linking 13 organizations in 7 countries centered around the Pacific Rim Ａｃｈｉｅｖｅｍｅｎｔ　２００６（２００５)： # ofPRIUS-Invited lecturers１３ （６） # of Internship Students　 　 ４ （１） “Studies on International Integrated Science I, II” University of Illinois, Chicago Harbin Institute of Technology University of California, San Diego University of Zurich, Irchel National Center for High-performance Computing University of Malaysia Queensland University of Technology QM/MM simulation Using OPAL OP Nanyang Technological University Bioscience GridPortal University of Melbourne Invited Lecturer Security Monitoring System Based on MOGAS Internship Student University of Canterbury PRIUS URL: http://prius.ist.osaka-u.ac.jp Augment Reality toolkit

  16. Access can be difficult during the most interesting times Photo by Peter Arzberger, October 2004 Towards a Global Lake Ecological Observatory Network Source: Tim Kratz Yuan Yang Lake, Taiwan ; photo by Matt Van de Bogert

  17. Collaboration in Environmental ScienceGlobal Lake Ecological Observatory Network • A grassroots network of • People: lake scientists, engineers, information technology experts • Institutions: universities, national laboratories, agencies • Programs: PRAGMA, AS-Forest Biogeochemistry,US-LTER, TERN, KING, EcoGrid, etc. • Instruments • Data • Linked by a common purpose and cyberinfrastructure • With a goal of understanding lake dynamics at local, regional, continental, and global scales

  18. 15 GLEON People & GroupsTEAM SCIENCE MEETINGS San DiegoMarch 05Townsville March 06 Hsinchu October 06 Lammi March 07 Montreal August 07 GLEON Existing sites = yellow New sites (RCN) = red • Research Coordination Network (NSF award, PI: P Hanson): • Includes a series of key science questions • Architectural design of coordinated global sensor network • Broaden involvement at all levels; new partners, outreach • and education

  19. Lessons Learned in Building e-Communities • Repeated structured interactions (workshops) to build the community • More often at first, twice/year now • Unstructured/Spontaneous interactions. It was several years before these started • Group focuses on enabling science outcomes • Technology builders give tutorials on capabilities • Science + Technologists work side-by-side • Infrastructure/Requirements evolves naturally • Not “Build it and they will come” • Not “Gather requirements, Get stakeholder Buy In” • Culture of openness and sharing of know-how and software • Continue to experiment: Applications, Technologies, Meetings (structure, types), People (and students) • Baby steps; and more baby steps (Learn by doing) • Break bread together • Stay PRAGMAtic

  20. Every Presentation Is an Invitation to Collaboration:Some Ideas • Involvement in PRAGMA Grid or other activities • Biosciences - Avian Flu; Metagenomics • Geosciences • GLEON (or CREON) • Telesciences and Tile Display Walls – NEEDS NETWORKING • PRAGMA Institute for South Asia • NCHC (Taiwan) has annual workshop for Southeast Asia • U of Hyderabad is willing to host a PRAGMA Institute for this region! • Exchange students and researchers • PRIME / PRIUS • Participation in PRAGMA Workshops • Two times per year

  21. Future PRAGMA Workshops • 20 – 22 March 2007, Bangkok Thailand • PRAGMA 12 Hosted by NECTEC and Thai National Grid Center, • 20 March 2007: GEOGrid Workshop • 23 – 25 September 2007, Urbana-Champaign Illinois USA • PRAGMA 13 Hosted by NCSA • Spring 2008, Hsinchu Taiwan • PRAGMA 14 Hosted by NCHC • Fall 2008, Penang Malaysia • PRAGMA 15 Hosted by USM www.pragma-grid.net

  22. But Why Get Involved? • Larger Reasons • Science is global and collaborative • Internet and grid designed globally • Personal or Institutional • Exposure to technologies and developers • Obtain users of software • Gain access to resources • Develop collaborators and contacts • Expose students/staff to new conduct of science • Launch new programs • Other • Force improvements in infrastructure

  23. Network Challenges:How common are these? • 1. Accessibility (easier in metro city) • 2. Cost of the Bandwidth (very high) • 3. Bound on latency (to be decreased) currently to USA it is < 330msecs. • 4. Bilateral/multilateral agreements

  24. SCIENCE EDUCATION GRID SOFTWARE Global Engagement Examples and Programs • GLEON • Global Ecological Observatory Network • Grassroots effort to understand lake dynamics • PRIME • Pacific Rim Experiences for Undergraduates • Prepares globally-enabled workforce • PRIUS • Pacific Rim International UniverSity at Osaka University • Prepares global workforce in context of curriculum • PRAGMA • Pacific Rim Application and Grid Middleware Assembly • Catalyzes collaborations • OptIPuter: • Optical networking, Internet Protocol, computer storage, processing and visualization technologies • Develops technologies for data intensive computing and collaborations Source: Philip Papadopoulos

  25. Acknowledgements • All PRAGMA members • Slides from Phil Papadopoulos, Cindy Zheng, FangPang Lin, Satoshi Sekiguchi • Gabriele Wienhausen, UCSD - PRIME • Susumu Date and Shinji Shimojo, Osaka University – PRIUS • Tim Kratz, U Wisconsin; Fang-Pang Lin, NCHC, David Hamilton, U Waikato – GLEON • Larry Smarr – OptIPuter • Wilfred Li – National Biomedical Computation Resource • Tony Fountain, Tim Kratz, Ken Chiu, Rick McMullen, Sameer Tilak - Autoscaling • Bill Chang, NSF for planting the seed and ongoing encouragement • NSF, Gordon and Betty Moore Foundation, TATRC, NIH • PRAGMA is supported by the NSF (Grant No. INT-0216895, INT-0314015, OCI -0627026), the San Diego Supercomputer Center, and the California Institute of Telecommuncations and Information Technology , The University of California, San Diego and member institutions • PRIME is Supported by the National Science Foundation under NSF INT 04007508 • AutoScaling, NEON 0446802 • The OptIPuter receives major funding from the National Science Foundation, cooperative agreement ANI-0225642 to UCSD • TATRC – for funding of avian flu international collaboration • NBCR – for biomedical infrastructure, funded by NIH

  26. A Final Thought • “Peace and prosperity around the world depend on increasing the capacity of people to think and work on a global and intercultural basis. As technology opens borders, educational and professional exchange opens minds.”[i] http://www.youtube.com/watch?v=4lY6x0S3IoA Google: PRIME students youtube [i] Annual Report IIE 2005, and http://www.iie.org/ “About”

More Related