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Measured Signal. Neuronal Activation. ?. ?. ?. ?. Hemodynamics. Noise. Dynamics Fluctuations Pattern Information Neuronal Current MRI. The BOLD Signal. B lood O xygenation L evel D ependent (BOLD) signal changes. task. task.

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Measured Signal

Neuronal Activation

?

?

?

?

Hemodynamics

Noise


  • Dynamics

  • Fluctuations

  • Pattern Information

  • Neuronal Current MRI


The BOLD Signal

Blood Oxygenation Level Dependent (BOLD) signal changes

task

task


Brief “off” periods produce smaller decreases than expected.

measured

2

1.5

0

linear

Signal (%)

1

Linearity

-2

measured

0.5

linear

-4

0

0

5

10

15

20

time (s)

Stimulus OFF duration (s)

R.M. Birn, P. A. Bandettini, NeuroImage, 27, 70-82 (2005)

Brief “on” periods produce larger increases than expected.

measured

linear

3

Linearity

2

Signal

linear

1

0

1

2

3

4

5

time (s)

Stimulus Duration (s)

R. M. Birn, Z. Saad, P. A. Bandettini, NeuroImage, 14: 817-826, (2001)


MEG & fMRI Linearity Comparison

A. Tuan, R. M. Birn, P. A. Bandettini, G. M. Boynton, (submitted)


MEG

Results

  • Tuan, R. M. Birn, P. A. Bandettini, G. M. Boynton,

  • International Journal of Imaging Systems and Technology 18, 17-28 (2008)


Measured and Predicted BOLD responses

Non-linearity computed from MEG prediction

3

0s ramp

0.5s ramp

1s ramp

Non-linearity

2

1

0

5

10

15

Stimulus Duration

Non-linearity computed from BOLD

3

Non-linearity

2

1

0

5

10

15

Stimulus Duration (s)

BOLDMEG

  • Tuan, R. M. Birn, P. A. Bandettini, G. M. Boynton,

  • International Journal of Imaging Systems and Technology 18, 17-28 (2008)


  • Dynamics

  • Fluctuations

  • Pattern Information

  • Neuronal Current MRI


Resting State Correlations

Activation:

correlation with reference function

Rest:

seed voxel in motor cortex

B. Biswal et al., MRM, 34:537 (1995)


  • Sources of time series fluctuations:

  • Blood, brain and CSF pulsation

  • Vasomotion

  • Breathing cycle (B0 shifts with lung expansion)

  • Bulk motion

  • Scanner instabilities

  • Changes in blood CO2 (changes in breathing)

  • Spontaneous neuronal activity


Breath holding

5

Z

0

5 %

Breath-holding

Group Maps (N = 7)

MR Signal

Respiration

Cue

time (s)

0

50

100

150

200

250

300

350

Breath-hold response (average Z-score)

Anatomy

R.M. Birn, J. A. Diamond, M. A. Smith, P. A. Bandettini, NeuroImage, 31, 1536-1548


50

100

150

200

250

300

350

1

0.5

CC

2

0

CO2

0

50

100

150

200

250

300

350

-0.5

RVT

-20

-10

0

10

time (s)

0

Shift (s)

0

50

100

150

200

250

T

max

min

300

310

315

305

time (s)

max - min

RVT =

T

Estimating respiration volume changes

Respiration

time (s)

Respiration Volume / Time (RVT)

RVT precedes end tidal CO2 by 5 sec.


Respiration induced signal changes

0

BOLD

Z

Respiration

Cue

0

100

200

300

Time (sec)

-4

5

Z

BOLD

Respiration

RVT

0

0

100

200

300

Time (sec)

Respiration induced signal changes

Rest

Breath-holding

(N=7)

R.M. Birn, J. A. Diamond, M. A. Smith, P. A. Bandettini, NeuroImage, 31, 1536-1548 (2006)


Resting state correlation with

signal from posterior cingulate

Resting state correlation with

RVT signal

10

6

|Z|

Z

0

-10

RVT Correlation Maps &Functional Connectivity Maps

Group (n=10)

R.M. Birn, J. A. Diamond, M. A. Smith, P. A. Bandettini, NeuroImage, 31, 1536-1548 (2006)


Effect of Respiration Rate Consistency on Resting Correlation Maps

Spontaneously Varying Respiration Rate

Constant Respiration Rate

10

10

Z

Z

-10

-10

Group (n=10)

R.M. Birn, J. A. Diamond, M. A. Smith, P. A. Bandettini, NeuroImage, 31, 1536-1548 (2006)



Temporal Signal to Noise Ratio (TSNR) vs. Signal to Noise Ratio (SNR)

J. Bodurka, F. Ye, N Petridou, K. Murphy, P. A. Bandettini, NeuroImage, 34, 542-549 (2007)


Sensitivity, Scan Time, and Temporal Signal to Noise Ratio (SNR)

K. Murphy, J. Bodurka, P. A. Bandettini, NeuroImage, 34, 565-574 (2007)


Multi sensory integration
Multi-sensory integration Ratio (SNR)

M.S. Beauchamp et al.,

Visual

Auditory

Multisensory


  • Dynamics Ratio (SNR)

  • Fluctuations

  • Pattern Information

  • Neuronal Current MRI


Pattern Information Ratio (SNR)

Mapping

“searchlight” ROI

N. Kriegeskorte, R. Goebel, P. Bandettini, Proc. Nat'l. Acad. Sci. USA, 103, 3863-3868 (2006)

From fixed ROI


96 Ratio (SNR)

0

0

0

0

0

0

dissimilarity

matrix

96

0

0

0

0

0

0

96

Dissimilarity Matrix

Creation

compute dissimilarity

(1-correlation across space)

response

patterns

...

ROI in Brain

stimuli

...

N. Kriegeskorte, et al, Neuron (in press)


Visual stimuli
Visual Stimuli Ratio (SNR)


Human Early Visual Cortex Ratio (SNR)(1057 visually most responsive voxels)

Human IT(1000 visually most responsive voxels)


Monkey human comparison procedure

Human Ratio (SNR)

fMRI in four subjects(repeated sessions,>12 runs per subject)

"quick" event-related design(stimulus duration: 300ms,stimulus onset asynchrony: 4s)

fixation task(with discrimination of fixation-point color changes)

occipitotemporal measurement slab(5-cm thick)

small voxels (1.951.952mm3)

3T magnet, 16-channel coil (SENSE, acc. fac. 2)

Monkey (Kiani et al. 2007)

single-cell recordingsin two monkeys

rapid serial presentation(stimulus duration: 105ms)

fixation task

electrodes in anterior IT(left in monkey 1, right in monkey 2)

674 cells total

windowed spike count(140-ms window starting 71ms after stimulus onset)

Monkey-Human Comparison Procedure


average of 4 subjects Ratio (SNR)

fixation-color task

316 voxels

average of 2 monkeys

fixation task

>600 cells

N. Kriegeskorte, et al Neuron (in press)


  • Dynamics Ratio (SNR)

  • Fluctuations

  • Pattern Information

  • Neuronal Current MRI


Magnetic Field Ratio (SNR)

Intracellular

Current

Surface Fields

100 fT at on the scalp

J.P. Wikswo Jr et al. J Clin Neuronphy 8(2): 170-188, 1991


Surface Field Distribution Across Spatial Scales Ratio (SNR)

Adapted from: J.P. Wikswo Jr et al.

J Clin Neurophy 8(2): 170-188, 1991


Magnetic field associated with a bundle of dendrites Ratio (SNR)

Because BMEG=100fTis measured by MEG on the scalp

at least50,000 neurons(0.002 fT (per dendrite) x 50,000 = 100 fT), must coherently act to generate such field. These bundles of neurons produce, within a typical voxel, 1 mm x 1 mm x 1 mm, a field of order:

BMRI0.2nT


B Ratio (SNR)0

calculated Bc ||B0

Measurement

70 A current



 200

Single shot GE EPI

Correlation image

J. Bodurka, P. A. Bandettini. Magn. Reson. Med. 47: 1052-1058, (2002).


Cortex Ratio (SNR)

Basal

Ganglia

100 mm

Plenz, D. et al. Neurosci 70(4): 861-924, 1996

in vitro model

Organotypic (no blood supply or hemoglobin traces) sections of newborn-rat somato-sensory Cortex &Basal Ganglia

  • Size: in-plane:~1-2mm2, thickness: 60-100m

  • Neuronal Population: 10,000-100,000

  • Spontaneous synchronized activity < 2Hz

  • Epileptiform activity

  • Spontaneous beta freq. activity (20-30Hz)

  • Network Activity Range: ~ 0.5-15V


1: Ratio (SNR)culture

2: ACSF

ACSF

Culture

C

C

A

A

B

B

FSE image

Hz

Hz

0.15Hz map

1

2

3 Tesla data

Active condition: black line

Inactive condition: red line

A: 0.15 Hz activity, on/off frequency

B: activity

C: scanner noise (cooling-pump)


7 Tesla data Ratio (SNR)

TTX

Power decrease between PRE & TTX EEG : ~ 81%

Decrease between PRE & TTX MR phase: ~ 70%

Decrease between PRE & TTX MR magnitude: ~ 8%

N. Petridou, D. Plenz, A. C. Silva, J. Bodurka, M. Loew, P. A. Bandettini, Proc. Nat'l. Acad. Sci. USA. 103, 16015-16020 (2006).


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