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Be lgian B iodiversity I nformation F acility BeBIF The Belgian National Node of the worldwide biodiversity network GBIF http://www.be.gbif.net. In collaboration with Hendrick Segers from the Belgium Biodiversity Platform http://www.biodiversity .be.

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Belgian Biodiversity Information Facility

BeBIF

The Belgian National Node of the worldwide biodiversity network GBIF

http://www.be.gbif.net

In collaboration with Hendrick Segers from the

Belgium Biodiversity Platform

http://www.biodiversity .be

TDWG (Portugal, October 2003)


Slide2 l.jpg

A Phylogenetical Tree to Locate Species …

Puma concolor (Linnaeus, 1771)

©www.animalsoftherainforest.org

TDWG (Portugal, October 2003)


Slide3 l.jpg

A Phylogenetical Tree to Locate Species …

Puma concolor (Linnaeus, 1771)

Classification*

Kingdom

Phylum

Class

Order

Family

Genus

Species

Animalia

Chordata

Mammalia

Carnivora

Felidae

Puma

concolor

©www.animalsoftherainforest.org

* Folowing the Catalogue of Life

TDWG (Portugal, October 2003)


Slide4 l.jpg

Classification*

Kingdom

Phylum

Class

Order

Family

Genus

Species

Animalia

Chordata

Mammalia

Carnivora

Felidae

Puma

concolor

* Folowing the Catalogue of Life

Other names

Mountain lion, Cougar, Puma (English)

Puma (French)

Puma, Silberlöwe (German)

Léon, Léon colorado, Léon de montaña (Spanish)

Onça vermelha, Onça parda suçuarana (Brazilian - Portugese)

© 1996 IUCN - The World Conservation Union

A Phylogenetical Tree to Locate Species …

Puma concolor (Linnaeus, 1771)

©www.animalsoftherainforest.org

TDWG (Portugal, October 2003)


Slide5 l.jpg

Classification*

Other names

Mountain lion, Cougar, Puma (English)

Puma (French)

Puma, Silberlöwe (German)

Léon, Léon colorado, Léon de montaña (Spanish)

Onça vermelha, Onça parda suçuarana (Brazilian - Portugese)

Kingdom

Phylum

Class

Order

Family

Genus

Species

Animalia

Chordata

Mammalia

Carnivora

Felidae

Puma

concolor

© 1996 IUCN - The World Conservation Union

* Folowing the Catalogue of Life

Synonyms

* Folowing the Catalogue of Life

A Phylogenetical Tree to Locate Species …

Puma concolor (Linnaeus, 1771)

©www.animalsoftherainforest.org

Felis californica May, 1896

Felis concolor Linnaeus, 1771

Felis couguar Kerr, 1792

Felis hippolestes Merriam, 1897

Felis improcera Phillips, 1912

TDWG (Portugal, October 2003)


Slide6 l.jpg

Classification*

Kingdom

Phylum

Class

Order

Family

Genus

Species

Animalia

Chordata

Mammalia

Carnivora

Felidae

Puma

concolor

* Folowing the Catalogue of Life

From information to XML storage

  • <Taxonomy >

    • <Kingdom >Animalia</Kingdom >

    • <Phylum >Chordata</Phylum >

    • <Class >Mammalia</Class >

    • <Order >Carnivora</Order >

    • <Family >Felidae</Family >

    • <Genus >Puma</Genus >

    • <Species >concolor</Species >

    • <Authors >

      • <Author >

        • <Name >Linnaeus, 1771</Name >

    • </Author >

  • </Authors >

  • </Taxonomy >

TDWG (Portugal, October 2003)


Slide7 l.jpg

From information to XML storage

<Synonym ID="ITS-180587" >

<Name >Felis concolor </Name >

<Authors >

<Author >

<Name >Linnaeus, 1771</Name >

</Author >

</Authors >

<Status >unambiguous synonym</Status >

<DateUpdated >14/10/1998</DateUpdated >

</Synonym >

<Synonym ID="ITS-203563" >

<Name >Felis improcera</Name >

<Authors >

<Author >

<Name >Phillipe, 1912</Name >

</Author >

</Authors >

<Status >unambiguous synonym </Status >

<DateUpdated >27/01/1998</DateUpdated >

</Synonym >

Synonyms

Felis californica May, 1896

Felis concolor Linnaeus, 1771

Felis couguar Kerr, 1792

Felis hippolestes Merriam, 1897

Felis improcera Phillips, 1912

* Folowing the Catalogue of Life

* Folowing the Catalogue of Life

TDWG (Portugal, October 2003)


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Other names

From information to XML storage

<CommonName >

<Name >Mountain lion</Name >

<Language >English</Language >

<Country >USA</Country >

<Provider >ITIS</Provider >

<RefBiblio >NA</RefBiblio >

<DateUpdated >27/01/1998</DateUpdated >

</CommonName >

<CommonName >

<Name >Florida panther</Name >

<Language >English</Language >

<Country >USA</Country >

<Provider >ITIS</Provider >

<RefBiblio >NA</RefBiblio >

<DateUpdated >27/01/1998</DateUpdated >

</CommonName >

Mountain lion, Cougar, Puma (English)

Puma (French)

Puma, Silberlöwe (German)

Léon, Léon colorado, Léon de montaña (Spanish)

Onça vermelha, Onça parda suçuarana (Brazil - Portugese)

© 1996 IUCN - The World Conservation Union

* Folowing the Catalogue of Life

TDWG (Portugal, October 2003)


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The XML file

  • <species ID="Puma concolor“>

  • <Provider>ITIS</Provider>

  • <Taxonomy >

    • <Kingdom >Animalia</Kingdom >

    • <Phylum >Chordata</Phylum >

    • </Taxonomy >

    • <Synonyms>

    • <Synonym ID="ITS-180587" >

    • <Name >Felis concolor </Name >

    • <DateUpdated >14/10/1998</DateUpdated >

    • </Synonym >

    • <Synonym ID="ITS-202393" >

    • <Name >Felis concolor coryi</Name >

    • ...

    • <DateUpdated >27/01/1998</DateUpdated >

    • </Synonym >

  • <Synonyms>

  • <CommonNames>

  • <CommonName >

  • <Name >Mountain lion</Name >

  • </CommonName >

  • <CommonName >

  • <Name >Florida panther</Name >

  • </CommonName >

  • <CommonNames>

  • </species>

TDWG (Portugal, October 2003)


Slide10 l.jpg

Classification*

Classification*

Classification*

Kingdom

Phylum

Class

Order

Family

Genus

Species

Animalia

Chordata

Mammalia

Carnivora

Felidae

Puma

concolor

Kingdom

Phylum

Subphylum

Class

Subclass

Infraclass

Order

Suborder

Family

Subfamily

Genus

Species

Kingdom

Phylum

Class

Subclass

Order

Suborder

Superfamily

Family

Subfamily

Genus

Species

Animalia

Chordata

Vertebrata

Mammalia

Theria

Eutheria

Carnivora

Feliformia

Felidae

Felinae

Puma

concolor

Animalia

Nematoda

Adenophorea

Chromadoria

Chromadorida

Chromadorina

Chromadoroidea

Chromadoridae

Spilipherinae

Acantholaimus

setosus

* Folowing the Catalogue of Life

* Folowing ITIS

* Folowing BIANZO

Complexity in Classification

©www.animalsoftherainforest.org

TDWG (Portugal, October 2003)


Slide11 l.jpg

Classification*

Kingdom

Phylum

Subphylum

Class

Subclass

Infraclass

Order

Suborder

Family

Subfamily

Genus

Species

Kingdom

Phylum

Class

Subclass

Order

Suborder

Superfamily

Family

Subfamily

Genus

Species

Animalia

Chordata

Vertebrata

Mammalia

Theria

Eutheria

Carnivora

Feliformia

Felidae

Felinae

Puma

concolor

Animalia

Nematoda

Adenophorea

Chromadoria

Chromadorida

Chromadorina

Chromadoroidea

Chromadoridae

Spilipherinae

Acantholaimus

setosus

Classification*

* Folowing ITIS

* Folowing BIANZO

Complexity in Classification

  • <Taxonomy >

    • <Kingdom >Animalia</Kingdom >

    • <Phylum >Chordata</Phylum >

    • <Subphylum> Vertebrata</Subphylum>

    • <Class >Mammalia</Class >

    • <Subclass>Theria</ Subclass>

    • <Infraclass>Eutheria</ Infraclass>

    • <Order >Carnivora</Order >

    • <Suborder>Feliformia </Suborder>

    • <Family >Felidae</Family >

    • <Subfamily>Felinae </Subfamily>

    • <Genus >Puma</Genus >

    • <Species >concolor</Species >

  • </Taxonomy >

  • <Taxonomy >

    • <Kingdom >Animalia</Kingdom >

    • <Phylum >Nematoda</Phylum >

    • <Class >Adenophorea</Class >

    • <Subclass >Chromadoria</Subclass >

    • <Order >Chromadorida</Order >

    • <Suborder >Chromadorina</Suborder >

    • <Superfamily >Chromadoroidea</Superfamily >

    • <Family >Chromadoridae</Family >

    • <Subfamily >Spilipherinae</Subfamily >

    • <Genus >Acantholaimus</Genus >

    • <Species >setosus</Species >

  • </Taxonomy >

TDWG (Portugal, October 2003)


Slide12 l.jpg

Classification*

Kingdom

Phylum

Subphylum

Class

Subclass

Infraclass

Order

Suborder

Family

Subfamily

Genus

Species

Kingdom

Phylum

Class

Subclass

Order

Suborder

Superfamily

Family

Subfamily

Genus

Species

Animalia

Chordata

Vertebrata

Mammalia

Theria

Eutheria

Carnivora

Feliformia

Felidae

Felinae

Puma

concolor

Animalia

Nematoda

Adenophorea

Chromadoria

Chromadorida

Chromadorina

Chromadoroidea

Chromadoridae

Spilipherinae

Acantholaimus

setosus

Classification*

* Folowing ITIS

* Folowing BIANZO

Complexity in Classification

  • <Taxonomy >

    • <Kingdom >Animalia</Kingdom >

    • <Phylum >Chordata</Phylum >

    • <Subphylum> Vertebrata</Subphylum>

    • <Class >Mammalia</Class >

    • <Subclass>Theria</ Subclass>

    • <Infraclass>Eutheria</ Infraclass>

    • <Order >Carnivora</Order >

    • <Suborder>Feliformia </Suborder>

    • <Family >Felidae</Family >

    • <Subfamily>Felinae </Subfamily>

    • <Genus >Puma</Genus >

    • <Species >concolor</Species >

  • </Taxonomy >

  • <Taxonomy >

    • <Kingdom >Animalia</Kingdom >

    • <Phylum >Nematoda</Phylum >

    • <Class >Adenophorea</Class >

    • <Subclass >Chromadoria</Subclass >

    • <Order >Chromadorida</Order >

    • <Suborder >Chromadorina</Suborder >

    • <Superfamily >Chromadoroidea</Superfamily >

    • <Family >Chromadoridae</Family >

    • <Subfamily >Spilipherinae</Subfamily >

    • <Genus >Acantholaimus</Genus >

    • <Species >setosus</Species >

  • </Taxonomy >

TDWG (Portugal, October 2003)


Slide13 l.jpg

<Taxonomy >

<Kingdom >Animalia</Kingdom >

<Phylum >Chordata</Phylum >

<Genus >Abramis</Genus >

<Species >bjoerkna</Species >

<Authors >

<Author >

<Name >Linnaeus, 1758</Name >

</Author >

</Authors >

</Taxonomy >

<Taxonomy >

<Kingdom >Missing</Kingdom >

<Phylum >Missing</Phylum >

<Genus >Genus</Genus >

<Species >species</Species >

<Authors >

<Author >

<Name >Linnaeus, 1758</Name >

</Author >

</Authors >

</Taxonomy >

COL

Classification

+

ECAT

From Datanode To ECAT (GBIF)

Species_ID Genus Name Species Name Author Year Common English Name Common French Name

fish0001 Abramis bjoerkna Linnaeus 1758 White Bream Brème bordelière

fish0002 Abramis brama Linnaeus 1758 Common BreamBrème commune

fish0003 Alburnoides bipunctatus Bloch 1782 Chub Ablette spirlin

fish0004 Alburnus alburnus Linnaeus 1758 Bleak Ablette commune

P. Mergen

ANTLR

Java tool

for

file parsing

TDWG (Portugal, October 2003)


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The XML Schema

WWW.BE.GBIF.NET

TDWG (Portugal, October 2003)


Slide15 l.jpg

How to reach BeBIF

http://www.be.gbif.net

http://www.be.gbif.net/services/Projects

http://www.gbif.org

For any questions or feed-back …

Belgian Biodiversity Information Facility (BeBIF)

Université Libre de Bruxelles

Campus de la Plaine CP 257

Bâtiment NO, Bureau 4 O4 210 (Niveau 4)

Boulevard du Triomphe, entrée ULB 2

B-1050 Bruxelles

[email protected]

Tél. : +32 2 650 57 51 - Fax : +32 2 650 5124

TDWG (Portugal, October 2003)


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